Boston Cream Cupcakes

Featured in Irresistible Sweet Treats.

These Boston cream cupcakes bring all the flavors of the classic pie in a handheld treat. Vanilla cake, creamy filling, and chocolate ganache in 55 minutes.
emliy for recipes by clare
Updated on Fri, 12 Sep 2025 15:48:21 GMT
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Boston Cream Pie Cupcakes Recipe | recipesbyclare.com

These Boston cream pie cupcakes happened when I was trying to figure out how to serve my husband's favorite dessert to a crowd without the mess of cutting a whole pie. He's been obsessed with Boston cream pie since our first date when he ordered it at this little diner, and I wanted to make something special for his birthday that would actually be practical for a party. Turning it into individual cupcakes solved the serving problem while keeping all those classic flavors he loves.

My sister-in-law, who usually sticks to store-bought desserts for family gatherings, actually asked me to teach her how to make these after trying them at my husband's birthday party. She said they reminded her of something her grandmother used to make but seemed much more approachable than dealing with pastry and pie pans.

What You'll Need

  • Yellow cake mix: Takes care of the cake base without measuring out flour and baking powder
  • Basic custard ingredients: Milk, sugar, cornstarch, egg yolks, butter, and vanilla for that creamy filling
  • Chocolate chips and heavy cream: Creates a simple ganache that's way easier than making frosting from scratch
  • Standard baking supplies: Cupcake liners, mixing bowls, and a saucepan for the custard
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Boston Cream Pie Cupcakes Recipe | recipesbyclare.com

How to Make Them

Start with the custard:
Mix sugar, cornstarch, and milk in a saucepan and cook while stirring until it thickens and bubbles. Take it off the heat and slowly whisk in the egg yolks to avoid scrambling them.
Finish the custard:
Put it back on the heat for a couple minutes to thicken, then stir in butter and vanilla. Let it cool completely while you work on the cupcakes.
Make the cupcakes:
Mix up the cake batter according to the box directions and bake in lined cupcake tins for about 15 minutes until done. Cool them completely before filling.
Prepare the ganache:
Microwave chocolate chips and cream in short bursts until melted, then whisk in powdered sugar. Let it cool for about 10 minutes until it's thick enough to spread.
Assemble everything:
Cut out the centers of the cooled cupcakes, fill with custard using a piping bag or spoon, then top with the cooled ganache.

I definitely rushed the custard the first time and ended up with a lumpy mess because I wasn't stirring constantly. The second attempt I burned the bottom because I had the heat too high. Now I keep it at medium heat and stir the whole time, which gives me smooth results every time.

Assembly Tips

Cut about an inch wide and deep into each cupcake for the filling, any bigger and the cupcake falls apart, any smaller and you don't get enough custard in each bite. A piping bag makes filling them much neater than trying to spoon it in, though either method works.

Serving and Storage

These need to be kept in the refrigerator because of the custard filling, but they taste fine cold or at room temperature. They'll keep for about four days covered, though the cupcakes might get a little less fluffy after the first day or two.

Ways to Switch It Up

You could make chocolate cupcakes instead of vanilla for a different twist, or add some rum extract to the custard for a more grown-up flavor. Different chocolate for the ganache changes the whole character, dark chocolate makes them more sophisticated while milk chocolate keeps them sweeter.

Boston Cream Pie Cupcakes Recipe Pin it
Boston Cream Pie Cupcakes Recipe | recipesbyclare.com

This recipe has become my go-to when I want to make something that looks impressive but doesn't require pastry skills or special equipment. There's something really satisfying about taking a classic dessert and making it more practical without losing any of the flavors that make it special. Every time I bring these somewhere, people mention how much they taste like the real thing, which is exactly what I was hoping for.

Frequently Asked Questions

→ Can I make the pastry cream ahead of time?
Yes! Make the pastry cream up to 2 days ahead and store it covered in the refrigerator. Just give it a quick stir before using.
→ What's the best way to fill the cupcakes?
Use a piping bag for the neatest results. Cut about 1 inch wide and 1 inch deep into each cupcake center for the perfect cream ratio.
→ Why is my ganache too runny?
Let the ganache cool for 10-15 minutes after mixing. It needs time to thicken up before you can properly top the cupcakes.
→ How should I store these cupcakes?
Keep them in the refrigerator for up to 4 days due to the cream filling. Don't freeze them as the texture won't be the same.
→ Can I use homemade vanilla cupcakes instead?
Absolutely! Any vanilla cupcake recipe will work. Just make sure they're completely cooled before filling and topping.
→ What if I don't have a piping bag?
You can use a spoon to fill the cupcakes, but it might not look as neat. A zip-top bag with the corner cut off works as a substitute piping bag.

Boston Cream Cupcakes

Soft vanilla cupcakes with pastry cream filling and rich chocolate ganache topping. Classic Boston cream pie in cupcake form.

Prep Time
40 Minutes
Cook Time
15 Minutes
Total Time
55 Minutes

Category: Sweet Treats

Difficulty: Difficult

Cuisine: American

Yield: 16 Servings (16 cupcakes)

Dietary: Vegetarian

Ingredients

→ Pastry Cream Filling

01 ¼ cup granulated sugar
02 1 tablespoon cornstarch
03 1 cup whole milk
04 2 large egg yolks
05 1 tablespoon unsalted butter
06 1 teaspoon pure vanilla extract

→ Vanilla Cupcakes

07 13.25 ounces yellow cake mix
08 1 cup water
09 ⅓ cup unsalted butter, melted
10 3 large eggs

→ Chocolate Ganache Topping

11 ½ cup semisweet chocolate chips
12 ¼ cup heavy cream
13 2 tablespoons powdered sugar

Instructions

Step 01

In a large saucepan, whisk together sugar, cornstarch, and milk until smooth. Cook over medium heat, stirring constantly, until the mixture thickens and starts to bubble. Let it simmer for 1 minute, then remove from heat.

Step 02

Slowly whisk a small amount of the hot milk mixture into the egg yolks to warm them up. Then pour this egg mixture back into the saucepan, whisking constantly to prevent scrambling.

Step 03

Return the pan to medium heat and bring to a gentle boil. Cook for 2 minutes, stirring continuously. Remove from heat and stir in butter and vanilla until smooth. Let cool to room temperature.

Step 04

Preheat oven to 350°F and line two 12-cup muffin tins with paper liners. Mix cake mix, water, melted butter, and eggs until just combined. Fill liners halfway and bake for 15 minutes until a toothpick comes out clean. Cool completely.

Step 05

Combine chocolate chips and heavy cream in a microwave-safe bowl. Heat in 15-second intervals until chocolate melts completely. Sift in powdered sugar and let cool for 10 minutes until it thickens.

Step 06

Use a knife to cut out the center of each cupcake about 1 inch wide and 1 inch deep. Fill each hollow with pastry cream using a piping bag or spoon. Top each cupcake with a generous dollop of chocolate ganache.

Notes

  1. Cut cupcake centers about 1 inch wide and 1 inch deep for the perfect cream-to-cake ratio
  2. Use a piping bag for neater filling - gives better control than spooning cream into cupcakes
  3. Let ganache cool for 10-15 minutes before topping to achieve the perfect thick consistency
  4. Store finished cupcakes in refrigerator for up to 4 days - freezing not recommended due to cream filling

Tools You'll Need

  • 2 cupcake tins (12-count each)
  • Hand mixer
  • Large saucepan
  • Piping bag and tips (optional)
  • Kitchen scale (optional)

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains eggs
  • Contains dairy
  • Contains gluten

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 220
  • Total Fat: 11 g
  • Total Carbohydrate: 28 g
  • Protein: 3 g