Breakfast Enchiladas

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Ham and green onions mixed with cheddar cheese, rolled in flour tortillas, topped with whisked eggs, half-and-half, flour, and salt, baked covered then uncovered with reserved cheese on top.

Tags: #bacon #sausage #cheese

Clare Greco
Updated on Tue, 08 Sep 2026 16:00:37 GMT
Breakfast Enchiladas
Breakfast Enchiladas | recipesbyclare.com
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Breakfast enchiladas combine the convenience of a make-ahead casserole with the tidy portions of rolled tortillas. Each flour tortilla holds cooked ham, green onions, and cheddar, while a simple egg-and-half-and-half custard settles around the rolls and bakes into a tender base.

The dish is particularly useful when breakfast needs to feed eight people at once. It can be assembled and refrigerated overnight, then baked covered until the eggs are nearly set and uncovered with a final layer of cheddar for a golden finish.

Ingredients and the Job Each One Does

Ingredients for breakfast enchiladas with ham, green onions, cheddar, flour tortillas, eggs, half-and-half, flour, salt, salsa, and sour cream
Ingredients for breakfast enchiladas with ham, green onions, cheddar, flour tortillas, eggs, half-and-half, flour, salt, salsa, and sour cream | Recipes by Clare
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  • Cooked ham: Two cups of cubes give the filling a savory center. Cut the pieces small enough that the tortillas roll without tearing.
  • Green onions: Half a cup adds mild onion flavor and a fresh edge to the rich custard.
  • Cheddar: Use two cups inside the rolls and reserve the final half cup for the uncovered bake.
  • Flour tortillas: Eight soft 8-inch tortillas fit a 9-by-13-inch dish. Flexible room-temperature tortillas roll most cleanly.
  • Eggs and half-and-half: Four eggs and 1 1/4 cups half-and-half form the custard around the rolls.
  • Flour and salt: One tablespoon of flour gives the custard a little structure, and half a teaspoon of salt seasons it evenly.
  • Optional toppings: Salsa, sour cream, and extra green onions should be added after baking.

How to Assemble and Bake the Casserole

Four stages for breakfast enchiladas: mixing ham and cheddar, rolling tortillas, pouring egg custard, and adding cheese before the final bake
Four stages for breakfast enchiladas: mixing ham and cheddar, rolling tortillas, pouring egg custard, and adding cheese before the final bake | Recipes by Clare
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  1. Prepare the dish. Heat the oven to 350°F and coat a 9-by-13-inch baking dish with cooking spray.
  2. Mix the filling. Combine the cubed cooked ham, chopped green onions, and two cups of shredded cheddar. Keep the remaining half cup of cheese separate.
  3. Fill and roll. Place about half a cup of filling across each tortilla. Roll it snugly and arrange it seam-side down in the dish. Set the eight rolls close together so they support one another.
  4. Whisk the custard. Whisk the half-and-half, four eggs, flour, and salt until the eggs are fully blended and no obvious flour pockets remain.
  5. Pour evenly. Slowly pour the custard across the rolls, moving from end to end so every tortilla receives some liquid.
  6. Bake covered. Cover the dish with foil and bake for 30 to 40 minutes, until the egg mixture is mostly set.
  7. Add the reserved cheese. Remove the foil, scatter the remaining half cup of cheddar over the top, and bake uncovered for 10 minutes more.
  8. Rest and serve. Let the casserole stand briefly before serving with salsa, sour cream, or extra green onions.

Roll the Tortillas without Tearing

Cold flour tortillas can crack along the fold, so bring them to room temperature or warm the stack briefly under a barely damp towel. Keep the filling in a compact line rather than spreading it to every edge, then roll firmly without squeezing cheese and ham out the ends.

Place each tortilla seam-side down as soon as it is rolled. A snug row prevents the rolls from opening when the custard is poured. If your tortillas are especially thin, use slightly less than half a cup of filling in the first one and adjust from there.

Why the Two-Stage Bake Works

Foil traps moisture during the first 30 to 40 minutes, giving the egg mixture time to set without drying the tortilla edges. The cover also slows browning while the cold center catches up, which is especially important after an overnight rest.

Once the custard is nearly firm, the foil comes off and the reserved cheddar goes on. Ten uncovered minutes melt the cheese and give the surface color. Adding the cheese only at this point keeps it from becoming oily before the eggs are cooked.

The Overnight Make-Ahead Option

Assemble the rolls, place them in the prepared dish, and pour over the custard. Cover tightly and refrigerate overnight. This saves the measuring and rolling work for the day before and allows the tortillas to absorb some of the seasoned egg mixture.

Move a glass or ceramic dish from the refrigerator while the oven preheats so it is not subjected to an abrupt temperature change. A fully chilled casserole may need the longer end of the covered baking range. Always judge doneness in the center rather than relying only on the clock.

Variations That Preserve the Method

Cooked crumbled sausage or crisp bacon can replace part or all of the ham. Keep the total volume of meat close to two cups and drain it well so excess fat does not interfere with the custard. A pepper Jack and cheddar blend adds gentle heat without changing the baking method.

For vegetables, cooked bell peppers or well-drained spinach are better than watery raw additions. Cool them before mixing with the cheese. Whatever filling you choose, keep the same four-egg custard and make sure all meat is fully cooked before assembly.

Serving a Brunch Crowd

Allow the pan to rest for 5 to 10 minutes so the custard settles and the enchiladas lift cleanly. Serve one roll per person with salsa and sour cream on the side. Fresh fruit or a citrus salad provides a bright contrast, while breakfast potatoes make the meal more substantial.

Put wet toppings on individual servings instead of the full pan. The remaining enchiladas will store better without salsa soaking into the tortillas, and guests can control the level of spice and richness on their own plates.

Golden breakfast enchiladas filled with ham and cheddar in a baked egg custard
Golden breakfast enchiladas filled with ham and cheddar in a baked egg custard | recipesbyclare.com
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Storage and Reheating

Refrigerate cooled leftovers in an airtight container for up to three days. Reheat individual portions in short microwave intervals, or cover the baking dish and warm it in a 350°F oven for about 15 minutes. Remove the cover for the last few minutes if the top needs to dry slightly.

Freezing can soften the tortillas and make the custard release moisture, so refrigeration is the better make-ahead choice. If you do freeze portions, wrap them after baking and cooling, thaw overnight in the refrigerator, and reheat covered until hot in the center.

Conclusion

Fill soft flour tortillas with cooked ham, green onions, and most of the cheddar, then arrange them seam-side down and cover them evenly with the four-egg custard. Bake covered until the center is mostly set, add the reserved cheese, and finish uncovered for 10 minutes.

Frequently Asked Questions

→ Can breakfast enchiladas be assembled the night before?

Yes. Assemble the rolls, add the custard, cover the dish, and refrigerate overnight. A cold casserole may need the longer end of the 30-to-40-minute covered bake.

→ How do I know when the egg custard is done?

The center should be set rather than visibly liquid, and the casserole should hold together after a brief rest. Check the middle because the edges cook first.

→ Can I substitute bacon or sausage for ham?

Yes. Use fully cooked, well-drained bacon or sausage and keep the total meat volume close to two cups so the tortillas are not overfilled.

→ How do I stop flour tortillas from cracking?

Use soft room-temperature tortillas or warm the stack briefly under a barely damp towel before filling and rolling.

4.32 from 29 votes

Breakfast Enchiladas

Preparation Time:
10 Minutes
Cook Time:
30 Minutes
Total Cooking Time:
40 Minutes
Number of Servings:
8
Breakfast Enchiladas
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Soft flour tortillas filled with ham, green onions, and cheddar cheese, topped with a savory egg custard and baked until golden.

Ingredients You'll Need

  • For the Filling

  • For Assembly

  • For the Egg Custard

  • Optional Toppings

How to Make It

1.

1. Preheat and Prepare: Preheat your oven to 350 degrees. Spray a 9x13 inch baking dish with cooking spray.

2.

2. Make Ham and Cheese Mixture: In a medium bowl, stir together the cubed ham, chopped green onions, and 2 cups of shredded cheddar cheese. Reserve the remaining 1/2 cup of cheese for topping later.

3.

3. Fill Tortillas: Use a 1/2-cup measuring cup to scoop out about 1/2 cup of the ham and cheese mixture onto each tortilla.

4.

4. Roll Enchiladas: Roll up each tortilla tightly and place seam-side down in the prepared baking dish. Arrange all the rolled tortillas so their sides are touching.

5.

5. Make Egg Custard: In a medium bowl, whisk together the half-and-half, eggs, flour, and salt until well combined.

6.

6. Pour Custard Over Enchiladas: Pour the egg custard mixture evenly over the rolled tortillas in the baking dish.

7.

7. Make Ahead Option: If making ahead, cover the baking dish with foil or plastic wrap and refrigerate overnight. The flavors meld beautifully, and you can just pop it in the oven in the morning!

8.

8. First Bake - Covered: Cover the baking dish with foil and bake for 30 to 40 minutes, or until the egg mixture is mostly set.

9.

9. Add Top Cheese: Remove the foil and sprinkle the reserved 1/2 cup of cheese over the enchiladas.

10.

10. Final Bake - Uncovered: Bake uncovered for 10 more minutes until the tops are golden brown and the egg mixture is completely set.

11.

11. Serve: Serve the enchiladas warm, plain or topped with salsa, sour cream, and additional green onions if desired!

Extra Information

  1. These breakfast enchiladas are perfect for using up leftover ham from Easter or Christmas.
  2. The egg custard that pours over the enchiladas creates a creamy, savory sauce as it bakes.
  3. Making these ahead overnight actually improves the flavor as the tortillas absorb the egg mixture.
  4. You can customize the filling with bacon, sausage, or other breakfast meats if you prefer.
  5. These are great for feeding a crowd or meal prepping for the week - make a couple of pans at once.
  6. Store leftovers in an airtight container in the fridge for up to 3 days. Reheat in a 350-degree oven for about 15 minutes.

Essential Tools

  • 9x13 inch baking dish
  • Medium mixing bowls
  • Whisk
  • 1/2-cup measuring cup
  • Aluminum foil

Allergy Warnings

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains dairy (cheddar cheese, half-and-half)
  • Contains eggs
  • Contains gluten (flour tortillas, flour)

Nutrition Details (Per Portion)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 340
  • Total Fat: 20 g
  • Total Carbohydrate: 18 g
  • Protein: 26 g