Ham and Cheese Egg Muffins

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These ham and cheese egg muffins are breakfast perfection! Easy to make, freezer-friendly, and perfect for busy mornings when you need a quick protein boost.
Olivia from Recipes by Clare
Updated on Sat, 31 May 2025 10:52:21 GMT
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These egg muffins saved my sanity during those crazy school morning rushes when my kids needed breakfast but we were always running late. I was tired of the same old cereal or toast routine and wanted something with actual protein that they could grab and eat in the car if needed. The idea of baking eggs in muffin tins seemed weird at first, but it turns out they're basically mini frittatas that are perfectly portioned and incredibly portable. Each little muffin delivers fluffy eggs packed with ham and cheese that taste way better than any drive-through breakfast sandwich.

My teenage daughter, who usually skips breakfast entirely because she's "too busy," started getting up five minutes earlier just so she could eat one of these before school. My husband takes them to work and says his coworkers are always asking where he got such good breakfast sandwiches. Even my mother-in-law was impressed when she visited and said they were "much better than those expensive frozen ones from the store."

What You Need

  • Fresh eggs - The star ingredient that creates the fluffy, protein-packed base
  • Good ham - I use thick ham steak cubed up because it has way more flavor than lunch meat
  • Sharp cheddar cheese - Shredded fresh tastes so much better than pre-shredded
  • Basic seasonings - Salt, pepper, garlic powder, and green onions for flavor
  • Muffin tin - Silicone works best, but regular metal works fine with good greasing
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Step-by-Step Instructions

Prep Work
Heat your oven to 350 degrees and spray your muffin tin really heavily with cooking spray. Don't skip this step or you'll have a nightmare trying to get them out later. Silicone muffin tins work the best, but regular metal ones are fine if you grease them well.
Egg Mixture Creation
In a large bowl, whisk together eggs, milk, salt, pepper, and garlic powder until everything is well combined and smooth. The milk makes them extra fluffy and creamy, while the seasonings give them actual flavor instead of just tasting like plain eggs.
Add-In Integration
Stir half a cup of the shredded cheddar cheese, cubed ham, and sliced green onions into the egg mixture. Save the remaining cheese for topping because that's what creates the beautiful golden top when they bake.
Filling Process
Divide the mixture evenly among the 12 muffin cups, filling each about 3/4 full. Don't overfill them or they'll overflow and make a mess. Top each one with a sprinkle of the remaining cheese for that perfect finishing touch.
Baking Time
Bake for 25 to 30 minutes until the eggs are set in the middle and start pulling away from the sides of the muffin cups. They should look puffy and golden on top, and a toothpick inserted in the center should come out clean.
Cooling and Storage
Let them cool in the pan for a few minutes before removing, then store in the refrigerator for up to four days. They're actually great cold, but you can warm them in the microwave for about 30 seconds if you prefer them hot.

I learned the greasing lesson the hard way after having half my first batch stick to the pan and come out in pieces. Now I'm generous with the cooking spray and they pop right out. Also, I used to fill them too full thinking more was better, but they just overflow and make a mess.

Perfect Pairings

These are complete little breakfast packages on their own, but they're great with some fresh fruit or a slice of toast if you want something more substantial. They work perfectly with coffee, orange juice, or even just water if you're running out the door. For weekend brunches, I'll serve them alongside hash browns or fresh berries.

Creative Variations

Try different vegetables like diced bell peppers, mushrooms, or spinach for extra nutrition and flavor. Different cheeses like Swiss, pepper jack, or feta create interesting variations. You could use turkey or sausage instead of ham, or even make them vegetarian with just cheese and vegetables. Some people add herbs like chives or parsley for extra freshness.

Storage Solutions

These keep beautifully in the fridge for up to four days and are perfect for meal prep. You can also freeze them for up to three months - just wrap individually and thaw overnight before eating. They reheat perfectly in the microwave or can be eaten cold straight from the fridge, which makes them incredibly convenient.

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These ham and cheese egg muffins have become an essential part of our weekly meal prep because they solve the eternal breakfast problem of needing something quick, healthy, and actually satisfying. They prove that convenience food doesn't have to come from a package to be practical and delicious. Every time I make a batch, I'm reminded why simple recipes with good ingredients often turn out to be the most useful ones in your kitchen.

Frequently Asked Questions

→ Can I freeze these egg muffins?
Yes! These freeze beautifully for up to 3 months. Cool completely, then store in freezer bags. Reheat in the microwave for 30-60 seconds from frozen.
→ Why do you recommend a silicone muffin tin?
Silicone muffin tins make it much easier to remove the egg muffins without sticking. If using metal, make sure to spray very generously with cooking spray.
→ Can I substitute the ham with other proteins?
Absolutely! Try cooked bacon, sausage, turkey, or even vegetables like spinach and mushrooms. Just keep the total amount similar.
→ How do I know when they're done?
The egg muffins are done when they pull away from the sides of the muffin cups and are set in the middle. A toothpick inserted in the center should come out clean.
→ Can I make these dairy-free?
Yes! Substitute the milk with unsweetened almond milk or another non-dairy milk, and omit the cheese or use a dairy-free cheese alternative.

Ham and Cheese Egg Muffins

Protein-packed egg muffins filled with ham, cheddar cheese, and green onions - perfect for grab-and-go breakfasts and meal prep.

Prep Time
10 Minutes
Cook Time
25 Minutes
Total Time
35 Minutes

Category: Morning Favorite

Difficulty: Easy

Cuisine: American

Yield: 12 Servings (12 egg muffins)

Dietary: Low-Carb, Gluten-Free

Ingredients

→ Main Ingredients

01 12 large eggs
02 1/2 cup milk (skim milk used)
03 1/2 teaspoon salt
04 1/4 teaspoon black pepper
05 1/4 teaspoon garlic powder
06 3/4 cup shredded cheddar cheese, divided
07 8 ounces ham steak, cubed
08 2 green onions, sliced thin

Instructions

Step 01

Preheat oven to 350°F. Spray a muffin tin heavily with cooking spray (silicone muffin tin works best). Set aside.

Step 02

In a large bowl, whisk together the eggs, milk, salt, black pepper, and garlic powder until well combined.

Step 03

Stir in 1/2 cup of the shredded cheddar cheese, cubed ham, and sliced green onions.

Step 04

Fill the muffin tins with the egg mixture. Top with the remaining 1/4 cup cheese.

Step 05

Bake for 25-30 minutes or until the eggs pull away from the sides of the muffin tin and are set in the middle.

Step 06

Store leftovers in the refrigerator for up to four days. These can also be frozen and reheated.

Notes

  1. These ham and cheese egg muffins are such an easy, delicious breakfast on the go.
  2. Made with simple ingredients and easy to freeze - your family will love these muffin tin eggs.
  3. A silicone muffin tin works best for easy removal and even cooking.
  4. Perfect for meal prep and busy mornings when you need a quick, protein-packed breakfast.

Tools You'll Need

  • 12-cup muffin tin (silicone preferred)
  • Large mixing bowl
  • Whisk
  • Cooking spray

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains eggs
  • Contains dairy (milk and cheddar cheese)
  • May contain soy (check ham ingredients)

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 120
  • Total Fat: 7 g
  • Total Carbohydrate: 3 g
  • Protein: 11 g