Pumpkin Pecan Mini Cheesecakes

Featured in Irresistible Sweet Treats.

These mini cheesecakes combine pumpkin spice flavors with a ginger crust and homemade caramel pecan topping for an irresistible fall dessert that's portioned for easy sharing.
Clare Greco
Updated on Tue, 04 Mar 2025 14:11:26 GMT
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These pumpkin pecan mini cheesecakes have become my fall entertaining secret weapon. I discovered this recipe a few years back when looking for something more exciting than pumpkin pie for Thanksgiving. The combination of spiced pumpkin cheesecake, crunchy gingersnap crust, and those caramelized pecans on top creates this perfect balance of flavors and textures that makes people think you spent hours in the kitchen.

Last autumn, I brought these to a friendsgiving dinner. My buddy Mike, who typically skips dessert, ate two and then asked if he could take another home "for later." His wife texted me the next day asking for the recipe because he wouldn't stop talking about them.

Key Ingredients

  • Gingersnap crust: The spicy cookies create a more interesting base than graham crackers. The ginger perfectly complements the pumpkin filling.
  • Vanilla yogurt: This adds a subtle tang and creaminess to the filling that makes it lighter than traditional cheesecake.
  • Pumpkin puree: Make sure to use pure pumpkin, not pumpkin pie filling. The canned stuff works perfectly here.
  • Spice blend: That combination of cinnamon, pumpkin spice, ginger, and nutmeg creates the perfect fall flavor profile.
  • Caramel pecans: This topping takes these cheesecakes to another level. The buttery, caramelized nuts add incredible texture and richness.
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Cheesecake Magic

Room temperature ingredients
Don't skip bringing the cream cheese and eggs to room temperature. Cold ingredients won't incorporate properly, leaving you with lumps in your batter.
Gentle mixing technique
Mix the eggs in at low speed to prevent incorporating too much air, which can cause cracks in your cheesecakes.
The perfect bake
That "slightly jiggly in the center" guideline is crucial - they'll continue to set as they cool. Overbaking leads to dry, cracked cheesecakes.
Cooling strategy
Allowing them to cool completely before refrigerating prevents condensation from forming on top of your cheesecakes.
Pecan perfection
Toasting the pecans first dramatically enhances their flavor. Keep stirring that caramel mixture to prevent burning.
Removal technique
That trick with the icing spatula makes removing the cheesecakes from the pan so much easier. The slight twist really helps release them cleanly.

I've been perfecting this recipe for years, making small tweaks each fall. My first attempts used a water bath, which was unnecessary for these mini versions. Adding the vanilla yogurt was a game-changer that gave the filling a lighter texture than using all cream cheese. The caramel pecan topping evolved too - originally just a simple caramel that was too sweet, now perfectly balanced with that hint of salt and vanilla.

Serving Ideas

Serve these mini cheesecakes on a tiered stand for an impressive dessert table presentation. For a casual gathering, place them on a wooden board with some fall leaves or cinnamon sticks for decoration. Pair with a cup of spiced apple cider or coffee for the perfect fall dessert experience.

Tasty Twists

Try using graham crackers or chocolate cookie crumbs for the crust if gingersnaps aren't your thing. Add a tablespoon of bourbon to the pecan topping for an adult version with amazing depth of flavor. For a chocolate lover's version, add 1/4 cup of mini chocolate chips to the cheesecake batter.

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I've made these pumpkin pecan mini cheesecakes for countless fall gatherings, Thanksgiving dinners, and even as holiday gifts packed carefully in decorative boxes. There's something about that combination of creamy pumpkin filling, spicy gingersnap crust, and buttery pecan topping that just screams autumn. The individual portions make them perfect for sharing, though I'll admit to sometimes keeping a few hidden in the back of the fridge just for myself!

Frequently Asked Questions

→ Can I make these mini cheesecakes ahead of time?
Yes! These mini cheesecakes are perfect for making 1-2 days ahead. Store them covered in the refrigerator and add the whipped cream topping just before serving for the best presentation.
→ Can I freeze these pumpkin pecan mini cheesecakes?
Absolutely. Freeze them without the caramel pecan topping and whipped cream for up to 2 months. Thaw overnight in the refrigerator, then add the toppings before serving.
→ What can I substitute for ginger snap cookies in the crust?
Graham crackers or speculoos cookies (like Biscoff) make excellent substitutes for the ginger snap crust. Use the same amount and follow the same instructions.
→ Why did my cheesecakes crack on top?
Cheesecakes typically crack from overbaking or sudden temperature changes. Make sure to bake just until the centers are slightly jiggly, and allow them to cool at room temperature before refrigerating.
→ What can I use instead of TruWhip for topping?
You can use regular homemade whipped cream (1 cup heavy cream beaten with 2 tablespoons powdered sugar and ½ teaspoon vanilla), Cool Whip, or even a dollop of crème fraîche as alternatives.

Pumpkin Pecan Mini Cheesecakes

Individual pumpkin cheesecakes with a spiced ginger snap crust, topped with buttery caramel pecans and whipped cream - perfect for fall gatherings.

Prep Time
30 Minutes
Cook Time
25 Minutes
Total Time
55 Minutes

Category: Sweet Treats

Difficulty: Intermediate

Cuisine: American

Yield: 12 Servings (12 mini cheesecakes)

Dietary: Vegetarian

Ingredients

→ Ginger Snap Crust

01 ¾ cup ginger snap cookie crumbs
02 3 tablespoons unsalted butter, melted
03 1 tablespoon granulated sugar

→ Pumpkin Cheesecake Filling

04 14 ounces cream cheese, room temperature
05 1 cup granulated sugar
06 ¼ cup whole fat vanilla yogurt
07 1 tablespoon heavy whipping cream
08 2 large eggs, room temperature
09 ¾ cup pumpkin puree
10 1 teaspoon vanilla extract
11 1 teaspoon ground cinnamon
12 ¼ teaspoon pumpkin pie spice
13 ¼ teaspoon ground ginger
14 ⅛ teaspoon ground nutmeg

→ Caramel Pecan Topping

15 1⅓ cups pecan halves
16 6 tablespoons unsalted butter
17 ½ cup light brown sugar, packed
18 ½ cup heavy whipping cream
19 1 tablespoon corn syrup
20 ½ teaspoon vanilla extract
21 Pinch of kosher salt
22 1 tablespoon room temperature water
23 1½ teaspoons cornstarch

→ For Garnish

24 TruWhip or homemade whipped cream
25 Ground cinnamon for sprinkling

Instructions

Step 01

Preheat oven to 300°F. Line a standard 12-cup muffin tin with foil cupcake liners.

Step 02

In a medium bowl, combine ginger snap crumbs and sugar. Add melted butter and mix until the mixture resembles wet sand. Divide evenly among the 12 cups, pressing down firmly to create a flat base. Cover with parchment paper and refrigerate while preparing the filling.

Step 03

In a large mixing bowl using a stand mixer or hand mixer, beat cream cheese, sugar, cinnamon, pumpkin pie spice, ginger, and nutmeg on medium-high speed for 3-4 minutes until smooth and well combined.

Step 04

Add eggs one at a time, mixing on low speed until just combined. Add pumpkin puree and beat on medium-high speed until incorporated, scraping down the sides of the bowl as needed.

Step 05

In a small bowl, combine yogurt, heavy cream, and vanilla. Add to the cream cheese mixture and beat on medium-high speed until fully incorporated, scraping the bottom and sides of the bowl to ensure everything is evenly mixed. Do not overmix.

Step 06

Remove the crusts from the refrigerator. Fill each cup to the top with the cheesecake batter. Bake for 20-23 minutes until centers are just slightly jiggly. Allow to cool completely at room temperature.

Step 07

Once cooled, cover with plastic wrap and refrigerate for at least 4-6 hours or overnight until fully set.

Step 08

In a medium saucepan over medium heat, toast the pecans for 2-3 minutes, stirring frequently to prevent burning.

Step 09

Add butter to the toasted pecans and allow it to melt. Quickly add brown sugar and heavy cream, stirring until combined. Add corn syrup, vanilla, and salt, mixing until incorporated. Reduce heat to low and allow to simmer, stirring consistently.

Step 10

In a small bowl, mix cornstarch with room temperature water until dissolved. Add this mixture to the simmering caramel and pecans, stirring constantly. Cook for 2-3 more minutes until thickened. Remove from heat and transfer to a heat-safe bowl to cool.

Step 11

To remove cheesecakes from the muffin tin, use a sharp offset spatula to gently lift from one corner, working under the foil liner. If needed, give a gentle twist while pushing up from the bottom.

Step 12

Top each mini cheesecake with cooled caramel pecan mixture. Add a dollop of TruWhip or whipped cream on top and sprinkle with a little cinnamon.

Step 13

Serve chilled. Store leftovers covered in the refrigerator for up to 5 days.

Notes

  1. Ensure all cheesecake ingredients are at room temperature for the smoothest texture.
  2. The caramel pecan topping can be made a day ahead and gently rewarmed to soften before topping the cheesecakes.
  3. These mini cheesecakes are perfect for holiday gatherings as they can be made ahead and are individually portioned.
  4. For a less sweet version, reduce the sugar in the cheesecake filling to ¾ cup.

Tools You'll Need

  • Standard 12-cup muffin tin
  • Foil cupcake liners
  • Stand mixer or hand mixer
  • Medium saucepan
  • Heat-safe mixing bowls
  • Offset spatula
  • Measuring cups and spoons

Allergy Information

Please check ingredients for potential allergens and consult a health professional if in doubt.
  • Contains dairy (cream cheese, butter, yogurt, cream)
  • Contains eggs
  • Contains wheat (in ginger snap cookies)
  • Contains tree nuts (pecans)

Nutrition Facts (Per Serving)

It is important to consider this information as approximate and not to use it as definitive health advice.
  • Calories: 410
  • Total Fat: 28 g
  • Total Carbohydrate: 38 g
  • Protein: 5 g